Contents
Working directories
1 | i=/media/ht/ht_5T/Bioinformatics/Bioinfo-Softs/NCBI |
SRA Integrity check
You can run our vdb-validate
tool. For example:
1 | vdb-validate --option-file PRJNA_ID_SRR_Acc_List.txt |
This will verify the internal checksums for all of the accessions in your accession list file.
You can also validate one at a time. For example:
1 | vdb-validate SRR000001 |
You can turn off referential integrity checks if you just want to verify the checksums. It could speed things up. For example:
1 | vdb-validate -I no --option-file PRJNA_ID_SRR_Acc_List.txt |
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